\documentclass[a4paper,10pt,titlepage]{report}
-\linespread{1.3}
+\usepackage[toc,page]{appendix}
+\linespread{1.2}
\usepackage{setspace}
\onehalfspacing
\parskip 10pt % sets spacing between paragraphs
%\renewcommand{\baselinestretch}{1.5} % Uncomment for 1.5 spacing between lines
%\parindent 0pt % sets leading space for paragraphs
-
-\usepackage{ulem}
+\usepackage{mathrsfs}
+%\usepackage{ulem}
%\usepackage{natbib}
\usepackage{makeidx}
\usepackage{graphicx}
\usepackage{amsmath, amsthm,amssymb}
\usepackage{mathrsfs}
\usepackage{hyperref}
+\usepackage{url}
\usepackage{epstopdf}
\usepackage{float}
\usepackage{anyfontsize}
{\normalfont\LARGE\bfseries}{\thechapter.}{1em}{}
%\usepackage[usenames,dvipsnames]{color}
-%\usepackage{listings} % For code snippets
+\usepackage{minted} % For code snippets
+\AtBeginEnvironment{minted}{\singlespacing%
+ \fontsize{7}{7}\selectfont}
\definecolor{pink}{rgb}{1.0,0.5,0.5}
\definecolor{darkgray}{rgb}{0.1,0.1,0.1}
\definecolor{lightgray}{rgb}{0.95,0.95,0.95}
\newcommand{\that}[0]{\hat{\theta}}
\newcommand{\vect}[1]{\boldsymbol{#1}} % Draw a vector
+\newcommand{\matx}[1]{\boldsymbol{#1}} % Matrix
\newcommand{\divg}[1]{\nabla \cdot #1} % divergence
\newcommand{\curl}[1]{\nabla \times #1} % curl
\newcommand{\grad}[1]{\nabla #1} %gradient
\newcommand{\phasor}[1]{\tilde{#1}} % make a phasor
\newcommand{\laplacian}[1]{\nabla^2 {#1}} % The laplacian operator
-\renewcommand{\url}[1]{$\langle$\href{#1}{\underline{\color{blue}{#1}}}$\rangle$}
+%\renewcommand{\url}[1]{$\langle$\href{#1}{\underline{\color{blue}{#1}}}$\rangle$}
\newcommand{\rephrase}[1]{ \textcolor{red}{#1}}
%\usepackage{endfloat}
\rhead{\bfseries \thepage}
}
\cfoot{}
+\setlength{\pdfpxdimen}{1in/300} % Define resolution of PDF
+
+\def\changemargin#1#2{\list{}{\rightmargin#2\leftmargin#1}\item[]}
+\let\endchangemargin=\endlist
+
+
%---------------------------------------------------------
%---------------------------------------------------------
\include{meta/Titlepage} % This is who you are
-\input{meta/Abstract} % This is your thesis abstract
+\include{meta/Abstract} % This is your thesis abstract
+
+\include{meta/Letter}
+
+\input{meta/Acknowledgements}
%\newpage
%\include{meta/Acknowledgments} % This is who you thank
-
\pagenumbering{roman}
-\newpage
+%\newpage
%---------------------------------------------------------
% Do the table of Contents and lists of figures and tables
%---------------------------------------------------------
+
+\begingroup
+\let\cleardoublepage\relax
+\let\clearpage\relax
\linespread{0.3}
{\small\tableofcontents}
-\listoffigures
+\vspace*{6\baselineskip} % sigh
+{\small\listoffigures}
\markboth{}{}
+\endgroup
\linespread{1.5}
\newpage
%---------------------------------------------------------
%Include the chapters!
-\include{chapters/Introduction}
-\include{chapters/Proposal}
-\include{chapters/Background}
-\include{chapters/Progress}
-\include{chapters/Conclusion}
-%\newpage
-%---------------------------------------------------------
+
+\input{chapters/Introduction}
+
+\input{chapters/Background}
+
+\input{chapters/Process}
+
+\input{chapters/Results}
+
+\input{chapters/Conclusion}
+
+
+
+%--------------------------------------------
\renewcommand{\bibname}{References}
\bibliography{references/refs}
\bibliographystyle{unsrt}
\addcontentsline{toc}{part}{References}
-%---------------------------------------------------------
-
-% Appendices
-%\appendix
-%\include{appendices/achievements}
-%\include{proposal/proposal.tex}
-%\renewcommand\chaptername{Appendix}
-%\chapter{Appendix}
-%\include{appendices/electron_optics}
-%\include{appendices/electron_gun_circuit}
-%\include{appendices/tcs_noise}
-%\include{appendices/data_aquisition}
-
-
-%---------------------------------------------------------
+%{\bf Note:} We have collated most of these references at \url{http://szmoore.net/ipdf/documents/references/}
+\vspace*{6\baselineskip} % sigh
+%\begin{comment}
+\begin{appendices}
+\chapter{An Overview of Document Standards} \label {An Overview of Document Standards}
+Together with Section \ref{Precision Specified by Document Standards} this Appendix forms an overview of the well known standard document formats.
+
+\input{chapters/Background/Standards}
+\section{Compositing} \label{Compositing}
+\input{chapters/Background/Rendering/Compositing}
+\end{appendices}
+%\end{comment}
\end{document}