-\BOOKMARK [1][-]{section.4.3}{Variable Angle Spectroscopy Ellipsometry}{chapter.4}
-\BOOKMARK [1][-]{section.4.4}{Optical Transmission Spectroscopy}{chapter.4}
-\BOOKMARK [0][-]{chapter.5}{Conclusion}{}
-\BOOKMARK [-1][-]{chapter.5}{References}{}
-\BOOKMARK [0][-]{section..1}{A two dimensional electron gun simulation}{chapter.5}
+\BOOKMARK [2][-]{subsection.4.2.1}{Tuning the Electron Gun}{section.4.2}
+\BOOKMARK [2][-]{subsection.4.2.2}{Electron gun simulation}{section.4.2}
+\BOOKMARK [2][-]{subsection.4.2.3}{Deposition of Ag films onto a Si substrate}{section.4.2}
+\BOOKMARK [1][-]{section.4.3}{Optical Transmission Spectroscopy}{chapter.4}
+\BOOKMARK [2][-]{subsection.4.3.1}{Reference Spectrum}{section.4.3}
+\BOOKMARK [2][-]{subsection.4.3.2}{Transmission Spectra of Au and Black Au on Glass}{section.4.3}
+\BOOKMARK [1][-]{section.4.4}{Variable Angle Spectroscopy Ellipsometry}{chapter.4}
+\BOOKMARK [2][-]{subsection.4.4.1}{Model for Ag and Black Ag on a Si substrate}{section.4.4}
+\BOOKMARK [2][-]{subsection.4.4.2}{Surface and Bulk Plasmons in the Ag and Black Ag films}{section.4.4}
+\BOOKMARK [0][-]{chapter.5}{Conclusions}{}
+\BOOKMARK [-1][-]{chapter*.36}{References}{}