Automatic commit. Wed Aug 8 17:00:04 WST 2012

Chicken Little was right.

diff --git a/research/TCS/2012-08-08/151223.dat b/research/TCS/2012-08-08/151223.dat
index d7343c5..b067f3c 100644 (file)
--- a/research/TCS/2012-08-08/151223.dat
+++ b/research/TCS/2012-08-08/151223.dat
@@ -4065,3 +4065,741 @@
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+3245.72046947  3850    505.91  92.26   53.18   48.37
+3246.40254951  3850    508.70  92.90   51.65   45.41
+3247.08641887  3850    511.47  91.97   50.94   45.12
+3247.77240396  3850    517.36  93.94   50.18   44.49
+3248.45641589  3850    507.68  94.33   52.89   46.91
+3249.14047098  3850    533.37  92.18   50.33   46.26
+3249.82647538  3850    504.59  93.15   49.98   46.21
+3250.51067281  3850    504.64  92.31   51.9    42.89
+3251.19245458  3850    505.75  91.30   51.58   45.32
+3251.87647605  3850    501.11  92.97   49.79   45.42
+3252.56042647  3850    509.71  91.13   49.53   44.30
+3253.24046397  3850    517.9   92.9    48.52   44.35
+3253.92051744  3850    518.95  91.59   50.84   46.49
+3254.60444546  3850    522.57  92.45   50.3    45.24
+3255.29041886  3850    519.47  91.83   50.89   44.45
+3255.97843146  3850    517.22  93.73   52.48   47.78
+3256.66642642  3850    521.26  92.11   53.29   48.24
+3257.35446048  3850    518.10  91.47   55.55   51.5
+3258.04047441  3850    518.87  92.69   50.89   45.87
+3258.72439551  3850    521.13  92.97   51.66   50.68
+3259.41046453  3850    519.23  92.31   52.97   48.92
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+3262.14895606  3850    520.23  92.75   48.15   44.43
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+3277.01488519  3900    520.26  92.11   81.21   52.98
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+3284.57048583  3900    517.77  91.48   81.43   55.16
+3285.25843787  3900    520.79  92.67   83.53   56.50
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+3286.63504052  3900    517.81  91.54   82.96   54.59
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+3292.81242347  3900    496.45  91.81   79.22   54.71
+3293.49494863  3900    498.0   91.46   80.26   56.9
+3294.17895341  3900    498.58  92.39   81.67   57.97
+3294.86245394  3900    499.31  91.2    83.81   58.25
+3295.54451036  3900    503.3   90.29   77.22   53.11
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+3296.91444302  3900    500.19  91.39   79.3    53.22
+3297.59644198  3900    500.86  90.60   79.23   53.30
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+3298.96645546  3900    503.33  91.74   79.34   53.28
+3299.65040326  3900    504.6   90.32   81.6    53.27
+3300.33291245  3900    514.90  92.5    84.75   57.0
+3301.02089334  3900    520.56  91.29   86.3    56.78
+3301.70842743  3900    509.51  92.68   80.72   55.3
+3302.39294839  3900    509.17  91.56   82.37   56.61
+3303.08295941  3900    511.16  91.50   80.73   53.40
+3303.7724216   3900    511.70  91.41   79.3    53.91
+3304.45843601  3900    522.20  93.85   86.7    56.20
+3305.14442134  3900    533.78  91.3    81.71   54.59
+3305.82839704  3900    516.51  94.9    82.76   53.98
+3306.95824194  3950    487.56  91.81   119.2   60.23
+3307.64641356  3950    484.90  90.72   115.56  57.38
+3308.33241892  3950    498.32  90.15   121.83  57.4
+3309.01848865  3950    486.56  90.30   117.88  56.15
+3309.70645404  3950    484.57  89.51   116.92  58.83
+3310.39695287  3950    491.72  89.34   117.46  57.9
+3311.08645511  3950    494.50  90.84   117.43  56.15
+3311.77448201  3950    496.27  89.49   121.87  60.26
+3312.46242881  3950    488.29  88.67   119.92  59.16
+3313.14644051  3950    491.8   90.70   118.97  55.8
+3313.83047295  3950    497.95  90.32   115.26  57.27
+3314.51844049  3950    491.19  89.26   115.30  55.80
+3315.20444465  3950    500.80  90.7    116.91  61.71
+3315.89113402  3950    496.68  91.4    113.45  57.18
+3316.57846403  3950    496.1   89.90   116.10  54.64
+3317.2664721   3950    507.33  89.81   113.28  54.53
+3317.95442891  3950    511.90  90.41   118.29  56.31
+3318.64240837  3950    523.32  90.55   115.92  53.43
+3319.33042884  3950    521.32  90.64   121.9   55.43
+3320.01894951  3950    490.49  92.76   113.16  54.12
+3320.70892453  3950    482.67  89.11   118.57  53.50
+3321.39842963  3950    502.44  90.25   114.16  54.31
+3322.08646083  3950    503.65  90.60   126.65  58.18
+3322.77241802  3950    496.11  90.12   119.24  55.0
+3323.45843053  3950    503.73  90.40   115.70  58.10
+3324.14443755  3950    506.25  91.10   121.3   57.19
+3324.83043051  3950    486.96  90.36   114.44  54.67
+3325.51643991  3950    491.25  89.57   115.54  56.4
+3326.20244551  3950    497.13  92.12   118.35  57.96
+3326.89089298  3950    485.62  89.26   112.18  51.81
+3327.57841563  3950    493.40  89.15   119.49  55.25
+3328.26642251  3950    493.16  89.49   115.11  54.25
+3328.954422    3950    499.13  88.89   115.71  54.70
+3329.64242101  3950    495.47  90.30   115.94  54.82
+3330.33041835  3950    529.27  91.16   115.20  55.87
+3331.01635814  3950    500.79  89.78   114.37  55.0
+3331.70242095  3950    528.44  90.85   117.51  53.10
+3332.39243293  3950    509.74  92.19   114.62  54.38
+3333.08443499  3950    519.99  90.14   118.62  52.58
+3333.77444959  3950    484.76  90.90   116.40  55.83
+3334.46242547  3950    497.19  90.81   117.57  52.35
+3335.15041089  3950    511.46  90.4    115.87  57.47
+3335.83685803  3950    486.98  91.30   124.9   58.54
+3336.52283835  3950    510.7   90.21   115.87  57.61
+3337.210989    3950    498.26  90.15   114.18  52.47
+3337.89927053  3950    504.53  90.41   116.5   58.73
+3338.5843699   3950    489.99  91.81   112.27  58.5
+3339.2703526   3950    487.47  88.55   117.30  58.6
+3339.95840096  3950    504.31  90.34   119.36  57.34
+3340.64638543  3950    499.96  90.55   117.27  57.13
+3341.33341861  3950    500.58  90.74   116.73  56.8
+3342.02140212  3950    504.43  90.12   110.39  59.59
+3342.71041799  3950    500.72  89.97   114.58  55.24
+3343.39896512  3950    493.62  89.18   117.25  57.92
+3344.0864439   3950    498.27  90.17   112.20  54.45
+3344.77448153  3950    496.26  90.85   119.82  58.31
+3345.46044135  3950    504.89  90.14   118.85  62.4
+3346.14639044  3950    496.48  89.26   108.75  57.21
+3346.83248901  3950    501.50  90.34   117.5   57.95
+3347.51655555  3950    497.26  90.63   110.7   52.98

diff --git a/research/TCS/2012-08-08/160811.dat b/research/TCS/2012-08-08/160811.dat
new file mode 100644 (file)
index 0000000..bbea1ef
--- /dev/null
+++ b/research/TCS/2012-08-08/160811.dat
@@ -0,0 +1,20 @@
+# Experiment 2012-08-08 16:08:11.758228
+# Polling for Nones.
+# DAC = 0.0 + 50.0*int(step/60)
+# Data:
+# time DAC     ADC4    ADC5
+0.759829521179 0       189.29  161.37  186.59  111.99
+1.4398624897   0       0.33    1.51    383.83  8.54
+2.12140846252  0       0.53    1.87    379.78  9.46
+2.79539418221  0       0.46    1.37    374.99  7.22
+3.47135233879  0       0.56    2.12    379.54  7.46
+4.1553440094   0       0.45    1.55    368.49  6.80
+4.83434319496  0       0.45    1.62    365.20  6.29
+5.51037955284  0       0.53    1.88    367.16  6.7
+6.1933889389   0       0.30    1.24    365.67  6.53
+6.87333154678  0       0.30    1.42    365.21  6.17
+7.55136561394  0       0.52    2.4     361.29  6.21
+8.23287081718  0       0.51    1.71    365.10  6.11
+8.91884064674  0       0.57    1.81    367.46  5.94
+9.60143756866  0       0.52    2.2     369.19  6.29
+10.2761645317  0       0.54    2.25    378.34  6.31

diff --git a/thesis/appendixA.tex b/thesis/appendixA.tex
new file mode 100644 (file)
index 0000000..f019c94
--- /dev/null
+++ b/thesis/appendixA.tex
@@ -0,0 +1,114 @@
+\documentclass[10pt]{article}
+\usepackage{graphicx}
+\usepackage{caption}
+\usepackage{amsmath} % needed for math align
+\usepackage{bm} % needed for maths bold face
+ \usepackage{graphicx}    % needed for including graphics e.g. EPS, PS
+\usepackage{fancyhdr}  % needed for header
+
+\usepackage{hyperref}
+
+ \topmargin -1.5cm        % read Lamport p.163
+ \oddsidemargin -0.04cm   % read Lamport p.163
+ \evensidemargin -0.04cm  % same as oddsidemargin but for left-hand pages
+ \textwidth 16.59cm
+ \textheight 21.94cm 
+ %\pagestyle{empty}       % Uncomment if don't want page numbers
+ \parskip 7.2pt           % sets spacing between paragraphs
+ %\renewcommand{\baselinestretch}{1.5}         % Uncomment for 1.5 spacing between lines
+ \parindent 0pt                  % sets leading space for paragraphs
+
+
+\newcommand{\vect}[1]{\boldsymbol{#1}} % Draw a vector
+\newcommand{\divg}[1]{\nabla \cdot #1} % divergence
+\newcommand{\curl}[1]{\nabla \times #1} % curl
+\newcommand{\grad}[1]{\nabla #1} %gradient
+\newcommand{\pd}[3][ ]{\frac{\partial^{#1} #2}{\partial #3^{#1}}} %partial derivative
+%\newcommand{\d}[3][ ]{\frac{d^{#1} #2}{d #3^{#1}}} %full derivative
+\newcommand{\phasor}[1]{\tilde{#1}} % make a phasor
+\newcommand{\laplacian}[1]{\nabla^2 {#1}} % The laplacian operator
+
+\usepackage{color}
+\usepackage{listings}
+
+\definecolor{darkgray}{rgb}{0.95,0.95,0.95}
+\definecolor{darkred}{rgb}{0.75,0,0}
+\definecolor{darkblue}{rgb}{0,0,0.75}
+\definecolor{pink}{rgb}{1,0.5,0.5}
+\lstset{language=Java}
+\lstset{backgroundcolor=\color{darkgray}}
+\lstset{numbers=left, numberstyle=\tiny, stepnumber=1, numbersep=5pt}
+\lstset{keywordstyle=\color{darkred}\bfseries}
+\lstset{commentstyle=\color{darkblue}}
+%\lstset{stringsyle=\color{red}}
+\lstset{showstringspaces=false}
+\lstset{basicstyle=\small}
+
+
+\begin{document}
+
+\pagestyle{fancy}
+\fancyhead{}
+\fancyfoot{}
+
+\fancyhead[LO, L]{}
+\fancyfoot[CO, C]{\thepage}
+
+%\title{}
+%\author{}
+%\date{}
+%\maketitle
+
+%\tableofcontents
+
+%\pagebreak
+
+\section{Overview}
+
+The complete control circuit for the electron gun, including all power supplies, current measurement points, and part of the control and measurement circuitry from the Data Aquisition system is shown in Figure \ref{fig_electron_gun}.
+
+\section{Electron Optics}
+
+A diagram of the electron gun without attached electronics is shown in Figure \ref{fig_electron_gun_simple}, and a photograph of the gun is shown in Figure \ref{fig_electron_gun_photo}.
+
+
+
+\subsection{Focusing the Gun}
+
+The electron gun was been salvaged from an old Cathode Ray Oscilloscope (CRO). The original phosphor screen was also saved, which allowed for very rough focusing of the beam by viewing the illuminated region of the screen through a porthole in the vacuum chamber. Figure \ref{fig_electron_gun_screen_unfocused} and \ref{fig_electron_gun_screen_focused} are photographs of the illuminated spot under focusing conditions chosen to create the largest and sharpest possible spot sizes respectively.
+
+The distance between the gun and target sample was different to the distance from the gun to its original screen. In addition, the original screen consisted of a cylinder with conductive coating at the same potential as the final electrode. These differences in configuration mean that the gun must be refocused for use in TCS.
+
+The electron gun may be considered ``focussed'' if the beam is paraxial to the surface of the sample. 
+
+By a process of trial and error
+
+\section{Current Measurement}
+
+Total Current Spectroscopy methods measure the slope of current through a sample with respect to the energy of electrons relative to the sample surface. Often lock-in amplifier techniques are used \cite{???}. These have the advantage of reducing system noise whilst determining the slope directly, but require more time to set up than measuring the current through the sample as a function of incident electron energy, and later taking the derivative.
+
+To make 
+
+\section{Data Aquisition and Automation}
+
+\subsection{ADC Measurements}
+
+\subsection{DAC Control of Initial Energy}
+
+\section{Sources of Error}
+
+\subsection{Accuracy of ADCs}
+
+
+\subsection{Noise due to Instruments}
+
+\subsubsection{
+A plot of ADC counts vs time for several output voltages of 
+
+\subsection{Noise due to Ground Loops}
+
+\subsection{Reduction of Noise}
+
+
+\end{document}
+

diff --git a/thesis/thesis.tex b/thesis/thesis.tex
index d9d64c1..f914ca0 100644 (file)
--- a/thesis/thesis.tex
+++ b/thesis/thesis.tex
@@ -414,21 +414,27 @@ To simplify circuit diagrams, op-amps will be drawn with the power supply connec
 \subsection*{ADC Inputs}
 The AVR Butterfly offers easy access to four of the ATMega169's ADCs through PORTF. Each ADC is capable of measuring voltages (relative to ground) of $0 < V_{\text{adc}} < V_{cc}$ with 10 Bit resolution. A voltage divider constructed using a variable resistor allows manual adjustment of $V_{\text{adc}}$ so that voltages greater than $V_{cc}$ may still be measured.  Diodes between the ADC input, and $V_{cc}$ and ground, ensure that the ADC is protected from exposure to voltages outside the acceptable range. Figure \ref{fig_ADC_normal} shows the typical input circuit, used for three of the four available ADCs. 
 
-The voltage of the 
+The voltage at the ADC input can be related to the input of the voltage divider using Kirchoff's Voltage Law and Ohm's Law:
 \begin{align*}
  V_{\text{adc}} &= \frac{R_1}{R_1 + R_2} V_{\text{in}}
 \end{align*}
 Where $V_{\text{in}}$ is the voltage at the input of the circuit, $R_1$ is a fixed resistor, and $R_2$ is variable resistor.
 
-The $V_{\text{in}}$ can be determined from the ADC counts by:
+$V_{\text{in}}$ can be determined from ADC counts by:
 \begin{align*}
-       
+       V_{\text{in}} &= \frac{\text{ADC counts}}{2^{10}} \times 
 \end{align*}
 
 
+
 For differential or ``off-ground'' voltage measurements, the fourth ADC input is passed through an instrumentation amplifier. Low pass filters on the input are used to reduce AC noise on the inputs. The buffer amplifiers ensure that negligable current flows through the measurement circuit to ground.
 Figure \ref{fig_ADC5} shows the input circuit for off-ground voltage measurements. It is important to note that the circuit only functions when the input voltages are within the op-amp common-mode voltage range ($\pm15V$).
 
+The output of the instrumentation amplifier can be shown by using Kirchoff's Laws and the ideal model of op-amps to be:
+\begin{align*}
+       V_{\text{diff.}} = \frac{R_2}{R_1} 
+\end{align*}
+
 \subsection*{DAC Output}
 A commercial DAC board was used to produce the DAC output. The Microchip MCP4922 ET-Mini DAC is controlled by the AVR Butterfly using Motorola's Serial Peripheral Interface (SPI) Bus.