-\documentclass[a4paper,11pt,titlepage]{report}
+\documentclass[a4paper,10pt,titlepage]{report}
\linespread{1.3}
\usepackage{setspace}
\onehalfspacing
\parskip 10pt % sets spacing between paragraphs
%\renewcommand{\baselinestretch}{1.5} % Uncomment for 1.5 spacing between lines
%\parindent 0pt % sets leading space for paragraphs
-
-
+\usepackage{mathrsfs}
+%\usepackage{ulem}
%\usepackage{natbib}
\usepackage{makeidx}
\usepackage{graphicx}
\usepackage{amsmath, amsthm,amssymb}
\usepackage{mathrsfs}
\usepackage{hyperref}
-
\usepackage{epstopdf}
\usepackage{float}
-
-
+\usepackage{anyfontsize}
+\usepackage{mdframed}
+\usepackage[compact]{titlesec}
+\usepackage[table]{xcolor}
+\titlespacing{\chapter}{0pt}{-50pt}{0pt}
+% spacing glue: how to read {12pt plus 4pt minus 2pt}
+% 12pt is what we would like the spacing to be
+% plus 4pt means that TeX can stretch it by at most 4pt
+% minus 2pt means that TeX can shrink it by at most 2pt
+\titlespacing\section{0pt}{0pt plus 0pt minus 14pt}{0pt plus 0pt minus 14pt}
+\titleformat{\chapter}
+{\normalfont\LARGE\bfseries}{\thechapter.}{1em}{}
+
+%\usepackage[usenames,dvipsnames]{color}
+\usepackage{minted} % For code snippets
+\AtBeginEnvironment{minted}{\singlespacing%
+ \fontsize{7}{7}\selectfont}
+\definecolor{pink}{rgb}{1.0,0.5,0.5}
+\definecolor{darkgray}{rgb}{0.1,0.1,0.1}
+\definecolor{lightgray}{rgb}{0.95,0.95,0.95}
+\definecolor{gray}{rgb}{0.5,0.5,0.5}
+\definecolor{darkred}{rgb}{0.75,0,0}
+\definecolor{darkblue}{rgb}{0,0,0.35}
+\definecolor{green}{rgb}{0,0.70,0}
+\definecolor{black}{rgb}{0,0,0}
+%\lstset{language=Java}
+%\lstset{backgroundcolor=\color{darkgray}}
+%\lstset{numbers=left, numberstyle=\tiny, stepnumber=1, numbersep=5pt}
+%\lstset{keywordstyle=\color{darkred}\bfseries}
+%\lstset{commentstyle=\color{darkblue}}
+%\lstset{stringsyle=\color{red}}
+%\lstset{showstringspaces=false}
+%\lstset{basicstyle=\small}
+
+% keeps text within our margins
+%\sloppy
\newtheorem{theorem}{Theorem}[section]
\newtheorem{lemma}[theorem]{Lemma}
\newcommand{\that}[0]{\hat{\theta}}
\newcommand{\vect}[1]{\boldsymbol{#1}} % Draw a vector
+\newcommand{\matx}[1]{\boldsymbol{#1}} % Matrix
\newcommand{\divg}[1]{\nabla \cdot #1} % divergence
\newcommand{\curl}[1]{\nabla \times #1} % curl
\newcommand{\grad}[1]{\nabla #1} %gradient
\newcommand{\phasor}[1]{\tilde{#1}} % make a phasor
\newcommand{\laplacian}[1]{\nabla^2 {#1}} % The laplacian operator
+\renewcommand{\url}[1]{$\langle$\href{#1}{\underline{\color{blue}{#1}}}$\rangle$}
+\newcommand{\rephrase}[1]{ \textcolor{red}{#1}}
%\usepackage{endfloat}
%\nomarkersintext
\rhead{\bfseries \thepage}
}
\cfoot{}
+\setlength{\pdfpxdimen}{1in/300} % Define resolution of PDF
+
+\def\changemargin#1#2{\list{}{\rightmargin#2\leftmargin#1}\item[]}
+\let\endchangemargin=\endlist
+
+
%---------------------------------------------------------
%---------------------------------------------------------
\include{meta/Titlepage} % This is who you are
-\newpage
-
-\include{meta/Acknowledgments} % This is who you thank
+\input{meta/Abstract} % This is your thesis abstract
-\newpage
+%\newpage
-\include{meta/Abstract} % This is your thesis abstract
+%\include{meta/Acknowledgments} % This is who you thank
\pagenumbering{roman}
-\newpage
+%\newpage
%---------------------------------------------------------
% Do the table of Contents and lists of figures and tables
%---------------------------------------------------------
-\tableofcontents
+
+\begingroup
+\let\cleardoublepage\relax
+\let\clearpage\relax
+\linespread{0.3}
+{\small\tableofcontents}
+\vspace*{6\baselineskip} % sigh
+{\small\listoffigures}
\markboth{}{}
+\endgroup
+\linespread{1.5}
\newpage
\pagenumbering{arabic}
%---------------------------------------------------------
%Include the chapters!
-\include{chapters/Introduction}
-\include{chapters/BackgroundHardware}
-\include{chapters/BackgroundSoftware}
+\input{chapters/Introduction}
-\include{chapters/Approach} % This is chapter 2
-\include{chapters/Implementation}
+\input{chapters/Background}
-\include{chapters/Results} % etc.
+\input{chapters/Process}
-\include{chapters/Conclusion}
-%\newpage
-%---------------------------------------------------------
+\input{chapters/Results}
+
+\input{chapters/Conclusion}
+
+%--------------------------------------------
\renewcommand{\bibname}{References}
\bibliography{references/refs}
\bibliographystyle{unsrt}
\addcontentsline{toc}{part}{References}
-%---------------------------------------------------------
+{\bf Note:} We have collated most of these references at \url{http://szmoore.net/ipdf/documents/references/}
+\vspace*{6\baselineskip} % sigh
-% Appendices
-%\appendix
-%\include{appendices/achievements}
-%\include{proposal/proposal.tex}
-%\renewcommand\chaptername{Appendix}
-%\chapter{Appendix}
-%\include{appendices/electron_optics}
-%\include{appendices/electron_gun_circuit}
-%\include{appendices/tcs_noise}
-%\include{appendices/data_aquisition}
-
-
-%---------------------------------------------------------
\end{document}