5 # @purpose AVR Butterfly Datalogger control for Total Current Spectroscopy Measurements
6 # The AVR responds to a limited number of RS232 commands to read ADC channels and set the DAC
7 # This script can be used to control the DAC and monitor initial energy & sample current over RS232
16 import Gnuplot, Gnuplot.funcutils
19 gnuplot = Gnuplot.Gnuplot()
21 # TODO: Insert variables for calibration purposes here.
23 "ADC_Counts" : [2**10,2**10,2**10,2**10,2**10,2**10,2**10], # Maxed counts on ADC channels (10 bits = 2**10 = 1024)
24 "DAC_Counts" : 2**12, # Maxed counts on DAC channel (12 bits = 2**12 = 4096)
26 # Calibration data for DAC and ADC
28 "ADC" : [None, None, None, None, None, None, None, None],
30 # Data used for rough calibration if above data is not present
31 "Vref" : 3.3, # The output of the voltage regulator (Vref = Vcc) relative to signal ground
32 "ADC_Rin" : [None, None, None, None, 15000, 1100, 1100, 1100],
33 "ADC_Rvar" : [None, None, None, None, 1000, 5000, 10000, 50000],
37 # TODO: Adjust aqcuisition parameters here
38 aquire = { "DAC_Sweep" : "2000.0 + 500.0*int(step/500)", # DAC Sweep value (t is in STEPS, not seconds!)
40 #"ADC_Vi" : 5, # ADC channel to read back Vi (set by DAC) through
41 #"ADC_Is" : 4, # ADC channel to read back Is through
42 #"ADC_Ie" : 4, # ADC channel to read back Ie through
43 "DAC_Settle" : 0.0, # Time in seconds to wait for DAC to stabilise
44 #"response_wait" : 0.2, # Time to wait in seconds between sending data and reading back
49 #Setup the serial connection parameters
51 port="/dev/ttyUSB0", # Modify as needed (note: in linux need to run `sudo chmod a+rw /dev/ttyUSBX' to set permissions)
53 # Do not change the values below here (unless AVR butterfly is reprogrammed to use different values)
62 #Using an ordered dictionary, so results will be determined (or prompted for) in this order.
63 # Put things that are being changed a lot near the top of the list.
64 parameters = odict.odict([
65 ("Chamber Pressure" , None), # Chamber pressure now automatically determined
69 ("Venault Voltage" , None),
70 ("Accelerating Voltage" , None),
71 ("Focus Voltage" , None),
72 ("Deflection Voltage" , None),
73 ("Initial Voltage" , None),
74 ("Heating Current" , None),
75 ("Heating Voltage (across filament)" , None),
76 ("Heating Voltage (across power supply)", None),
77 #("610B Zero" , None),
79 #("610B Scale" , None),
81 ("602 0.1 Battery" , None),
82 ("602 0.03 Battery" , None),
83 ("602 0.01 Battery" , None),
84 ("602 0.003 Battery" , None),
85 ("602 0.001 Battery" , None),
87 ("Sample Angle", None),
88 ("ADC Regulator" , None),
90 ("Parameters last checked", None)
94 return str(datetime.datetime.now()).split(" ")[1].split(".")[0].replace(":","")
97 return str(datetime.datetime.now()).split(" ")[0]
102 p = subprocess.Popen("./pressure/get_pressure.sh", stdout=subprocess.PIPE)
103 #p = subprocess.Popen("./this_program_does_not_exist.sh", stdout=subprocess.PIPE)
105 result = float(p.stdout.readline().strip(" \r\n\t"))
111 # Used for when I press Control-C to stop things
112 def set_exit_handler(func):
116 win32api.SetConsoleCtrlHandler(func, True)
118 version = ".".join(map(str, sys.version_info[:2]))
119 raise Exception("pywin32 not installed for Python " + version)
122 signal.signal(signal.SIGTERM, func)
123 signal.signal(signal.SIGINT, func)
125 def killed_handler(signal, frame):
127 sys.stdout.write("\n# Reason for killing program? ")
128 reason = sys.stdin.readline().strip("\r\n ")
129 for out in aquire["open_files"]:
130 sys.stdout.write("# Closing file " + str(out) + "\n")
131 out.write("# Recieved KILL signal.\n# Reason: " + str(reason) + "\n")
137 for out in aquire["open_files"]:
138 out.write("# Program exits.\n")
142 result = open(a, b,0)
144 result.write("# File opened at " + str(datetime.datetime.now()) + "\n")
145 aquire["open_files"].append(result)
148 def log_close(afile):
149 if (afile in aquire["open_files"]):
150 afile.write("# File closed at " + str(datetime.datetime.now()) + "\n")
151 aquire["open_files"].remove(afile)
158 #atexit.register(cleanup)
159 set_exit_handler(killed_handler)
161 aquire["start_date"] = getDate()
168 # print("Waiting for \"# hello\" from device...")
169 # while (ser.readline().strip("\r\n") != "# hello"):
171 #while (ser.readline().strip("\r\n ") != "#"):
175 ser.write("a "+str(aquire["ADC_Averages"]) + "\r\n")
176 ser.readline().strip("\r\n")
177 ser.readline().strip("\r\n")
178 ser.readline().strip("\r\n")
179 #print(ser.readline().strip("\r\n"))
180 #print(ser.readline().strip("\r\n"))
181 #print(ser.readline().strip("\r\n"))
183 #print("Writing config information to config.dat...")
184 #output = log_open("config.dat", "w", 1)
186 #output.write("# Initialise " + str(datetime.datetime.now()) + "\n")
188 #for field in calibrate:
189 # output.write("# calibrate["+str(field)+"] = "+str(calibrate[field]) + "\n")
191 #for field in aquire:
192 # output.write("# aquire["+str(field)+"] = "+str(aquire[field]) + "\n")
194 #output.write("# Ready " + str(datetime.datetime.now()) + "\n# EOF\n")
201 # I haven't ever used calibrated results, and yet this code is still here, why???
202 #if (loadCalibration_DAC() == False):
203 # if (calibrateDAC() == False):
205 #if (loadCalibration_ADC(aquire["ADC_Is"]) == False):
206 # if (calibrateADC_usingDAC(aquire["ADC_Is"], False) == False):
207 # if (calibrateADC(aquire["ADC_Is"]) == False):
210 #if (loadCalibration_ADC(aquire["ADC_Vi"]) == False):
211 # if (calibrateADC_usingDAC(aquire["ADC_Vi"], True) == False):
212 # if (calibrateADC(aquire["ADC_Vi"]) == False):
216 # Make directory for today, backup calibration files
217 os.system("mkdir -p " + getDate())
218 #os.system("cp *.dat " + getDate() +"/")
227 # TODO: Modify data to record here
229 #for i in range(0,5):
231 os.system("mkdir -p " + getDate())
232 record_data([5], getDate()+"/"+str(getTime())+".dat", None, 4001)
238 input_file = log_open(getDate()+"/checklist", "r")
242 if (input_file != None):
243 for line in input_file:
247 item = k[0].strip("# \r\n")
248 value = k[1].strip("# \r\n")
250 if (item in parameters):
251 if item == "Chamber Pressure":
252 parameters[item] = getPressure()
254 parameters[item] = value
256 #print("Checklist found. Overwrite? [Y/n]")
257 response = "" #sys.stdin.readline().strip(" \r\n")
258 if (response == "" or response == "y" or response == "Y"):
259 input_file = log_open(getDate()+"/checklist.old", "w")
260 for item in parameters:
261 input_file.write("# " + str(item) + " = " + str(parameters[item]) + "\n")
262 input_file.write("\n")
263 log_close(input_file)
266 if (input_file == None):
267 for item in parameters:
268 if item == "Parameters last checked":
270 if item == "Chamber Pressure":
271 #sys.stdout.write("\""+str(item)+"\" = " + str(parameters[item]) + " - get new pressure... ")
272 parameters[item] = getPressure()
273 #sys.stdout.write(str(parameters[item]) + "\n")
276 sys.stdout.write("\""+str(item)+"\" = " + str(parameters[item]) + " New value?: ")
277 response = sys.stdin.readline().strip("\r\n ")
278 if (response == "!"):
281 parameters[item] = response
282 sys.stdout.write("\n")
283 parameters["Parameters last checked"] = str(datetime.datetime.now())
286 checklist = log_open(getDate()+"/checklist", "w")
287 for item in parameters:
288 checklist.write("# "+str(item) + " = " + str(parameters[item]) + "\n")
289 #output_file.write("# "+str(item) + " = " + str(parameters[item]) + "\n")
293 def record_data(ADC_channels, output, pollTime = None, dac_max = None):
296 gnuplot("set title \""+str(output)+"\"")
297 output = [log_open(output, "w"), sys.stdout]
300 gnuplot("set title \"<No file>\"")
301 output = [sys.stdout]
305 out.write("# aquire["+str(field)+"] = "+str(aquire[field]) + "\n")
308 out.write("# Parameters:\n")
310 parameters["Chamber Pressure"] = getPressure() # Update chamber pressure
312 for field in parameters:
314 out.write("# "+str(field)+" = " + str(parameters[field]) + "\n")
317 start_time = time.time()
319 gnuplot("set xlabel \"DAC (counts)\"")
320 gnuplot("set ylabel \"ADC (counts)\"")
325 out.write("# Experiment " + str(datetime.datetime.now()) + "\n")
326 out.write("# Polling for " + str(pollTime) + "s.\n")
328 out.write("# Data:\n")
329 out.write("# time\tDAC")
330 for channel in ADC_channels:
331 out.write("\tADC"+str(channel))
335 data = [] # Keep track of data for dynamic plotting
336 dacValue = int(eval(aquire["DAC_Sweep"]))
337 if (setDAC(dacValue) == False):
340 while (pollTime == None or time.time() < start_time + pollTime):
341 if (aquire["DAC_Sweep"] != None):
342 nextDacValue = int(eval(aquire["DAC_Sweep"]))
343 if (nextDacValue != dacValue):
344 dacValue = nextDacValue
351 if (dac_max != None and dacValue >= dac_max):
354 measure_start = time.time()
358 for channel in ADC_channels:
359 read = readADC(channel)
362 print("# Abort data collection due to failed ADC read")
363 if out != sys.stdout:
366 raw_adc.append((channel, read[0], read[1]))
368 end_time = time.time()
371 measure_time = measure_start + (end_time - measure_start)/2.0 - start_time
372 out.write(str(measure_time))
373 out.write("\t"+str(dacValue))
374 data.append([measure_time, dacValue])
377 out.write("\t" + str(adc[1]) + "\t" + str(adc[2]))
378 data[len(data)-1].append(adc[1])
379 data[len(data)-1].append(adc[2])
382 #gnuplot("set yrange [0:1023]")
383 #gnuplot("set xrange [0:4000]")
384 gnuplot("set xlabel \"DAC (counts)\"")
385 gnuplot("set ylabel \"Sample Current (ADC counts)\"")
386 gnuplot.plot(Gnuplot.Data(data, title="t = "+str(measure_time), with_="lp", using="2:3"))
388 if out != sys.stdout:
392 def loadCalibration_ADC(channel):
394 input_file = log_open("calibrateADC"+str(channel)+".dat")
396 print("Couldn't find calibration file for ADC " + str(channel))
399 calibrate["ADC"][channel] = []
401 l = l.split("#")[0].strip("\r\n ")
405 split_line = l.split("\t")
406 calibrate["ADC"][channel].append((float(split_line[0]), float(split_line[1])))
407 log_close(input_file)
409 if (len(calibrate["ADC"][channel]) <= 0):
410 print("Empty calibration file for ADC " + str(channel))
414 def loadCalibration_DAC():
416 input_file = log_open("calibrateDAC.dat")
418 print("Couldn't find calibration file for DAC")
421 calibrate["DAC"] = []
423 #print("Line is: "+str(l))
424 l = l.split("#")[0].strip("\r\n ")
428 split_line = l.split("\t")
429 if (len(split_line) >= 3):
430 calibrate["DAC"].append((int(split_line[0]), float(split_line[1]), float(split_line[2])))
432 calibrate["DAC"].append((int(split_line[0]), float(split_line[1])))
435 log_close(input_file)
437 if (len(calibrate["DAC"]) <= 0):
438 print("Empty calibration file for DAC")
442 def getADC_Voltage(channel, counts):
443 if (calibrate["ADC"][channel] == None or len(calibrate["ADC"][channel]) <= 0):
444 if (calibrate["ADC_Rin"][channel] != None and calibrate["ADC_Rvar"][channel] != None):
445 print("Warning: Using rough calibration for ADC"+str(channel) + " = " + str(counts))
446 ratio = float(calibrate["ADC_Rin"][channel]) / (float(calibrate["ADC_Rin"][channel]) + float(calibrate["ADC_Rvar"][channel]))
447 return ratio * (float(counts) / float(calibrate["ADC_Counts"][channel]) * Vref)
449 print("Error: No calibration for ADC"+str(channel))
452 c = calibrate["ADC"][channel]
454 for i in range(0, len(c)-1):
455 if (c[i][0] <= counts and i + 1 < len(c)):
456 grad = (float(c[i+1][valueIndex]) - float(c[i][valueIndex])) / (float(c[i+1][0]) - float(c[i][0]))
457 value = float(c[i][valueIndex]) + grad * (float(counts) - float(c[i][0]))
461 print("Warning: Extrapolating outside calibration range for DAC = " + str(counts))
463 grad = (float(c[len(c)-1][valueIndex]) - float(c[len(c)-2][valueIndex])) / (float(c[len(c)-1][0]) - float(c[len(c)-2][0]))
464 value = float(c[len(c)-1][valueIndex]) + grad * (float(counts) - float(c[len(c)-1][0]))
466 def readADC(channel):
467 #for i in range(0, aquire["ADC_Averages"]):
468 # ser.write("r "+str(channel)+"\r") # Send command to datalogger
469 #time.sleep(aquire["response_wait"])
470 # response = ser.readline().strip("#\r\n ")
471 # if (response != "r "+str(channel)):
472 # print("Received wierd response reading ADC ("+response+")")
474 #time.sleep(aquire["response_wait"])
475 # values.append(int(ser.readline().strip("\r\n ")))
476 # adc_sum += float(values[len(values)-1])
477 ser.write("r "+str(channel)+"\r")
478 response = ser.readline().strip("#\r\n")
479 if (response != "r "+str(channel)):
480 print("Received wierd response reading ADC ("+response+")")
482 return ser.readline().strip("\r\n").split(" ")
484 def getDAC_Voltage(counts, gain = True):
485 if (calibrate["DAC"] == None or len(calibrate["DAC"]) <= 0):
486 if (calibrate["DAC_Gain"] != None):
487 print("Warning: Using rough calibration for DAC = " + str(counts))
488 return float(counts) / float(calibrate["DAC_Counts"]) * float(calibrate["Vref"]) * float(calibrate["DAC_Gain"])
490 print("Error: No calibrate for DAC")
496 if (len(calibrate["DAC"][0]) < 3):
497 print("Error: No data for unamplified DAC")
502 print("Warning: Only one point in calibration data!")
503 return float(c[0][valueIndex])
505 for i in range(0, len(c)-1):
506 if (c[i][0] <= counts and i + 1 < len(c)):
507 grad = (float(c[i+1][valueIndex]) - float(c[i][valueIndex])) / (float(c[i+1][0]) - float(c[i][0]))
508 value = float(c[i][valueIndex]) + grad * (float(counts) - float(c[i][0]))
512 print("Warning: Extrapolating outside calibration range for DAC = " + str(counts))
514 grad = (float(c[len(c)-1][valueIndex]) - float(c[len(c)-2][valueIndex])) / (float(c[len(c)-1][0]) - float(c[len(c)-2][0]))
515 value = float(c[len(c)-1][valueIndex]) + grad * (float(counts) - float(c[len(c)-1][0]))
521 ser.write("d "+str(level)+"\r")
523 response = ser.readline().strip("#\r\n ")
524 if (response != "d "+str(level)):
525 print("Recieved wierd response setting DAC to "+str(level) + " ("+response+")")
527 #time.sleep(aquire["response_wait"])
528 #time.sleep(aquire["DAC_Settle"])
529 #time.sleep(aquire["DAC_Settle"])
530 response = ser.readline().strip("#\r\n ")
531 if (response != "DAC "+str(level)):
532 print("Recieved wierd response setting DAC to "+str(level) + " ("+response+")")
534 #time.sleep(aquire["response_wait"])
535 time.sleep(aquire["DAC_Settle"])
538 def calibrateADC_usingDAC(channel, gain = True):
539 if (calibrate["DAC"] == None):
540 print("ERROR: DAC is not calibrated, can't use to calibrate ADC!")
543 calibrate["ADC"][channel] = []
544 outfile = log_open("calibrateADC"+str(channel)+".dat", "w")
545 outfile.write("# Calibrate ADC " + str(channel) + "\n")
546 outfile.write("# Start " + str(datetime.datetime.now()) + "\n")
548 print("Connect DAC output to ADC " + str(channel) + " and press enter\n")
551 for dac in calibrate["DAC"]:
552 if (setDAC(dac[0]) == False):
555 value = readADC(channel)
558 canadd = (len(calibrate["ADC"][channel]) <= 0)
559 if (canadd == False):
561 for adc in calibrate["ADC"][channel]:
562 if adc[0] == value[0]:
573 #input_value = getDAC_Voltage(dac[0], gain)
574 if (input_value == False):
577 outfile.write(str(value[0]) + "\t" + str(input_value) + "\t" + str(value[1]) + "\n")
578 print(str(value[0]) + "\t" + str(input_value) + "\t" + str(value[1]))
580 calibrate["ADC"][channel].append((value[0], input_value, value[1]))
582 outfile.write("# Stop " + str(datetime.datetime.now()) + "\n# EOF\n")
584 if (setDAC(0) == False):
586 if (len(calibrate["ADC"][channel]) <= 0):
587 print("Error: No calibration points taken for ADC " + str(channel))
591 def calibrateADC(channel):
592 calibrate["ADC"][channel] = []
593 outfile = log_open("calibrateADC"+str(channel)+".dat", "w")
594 outfile.write("# Calibrate ADC " + str(channel) + "\n")
595 outfile.write("# Start " + str(datetime.datetime.now()) + "\n")
597 print("Calibrating ADC...\n")
598 print("Enter measured voltage, empty line stops.\n")
601 read = sys.stdin.readline().strip("\r\n ")
604 input_value = float(read)
605 output_value = readADC(channel)
606 if (output_value == False):
609 calibrate["ADC"][channel].append((output_value[0], input_value))
610 print(str(output_value[0]) + "\t" + str(input_value))
612 calibrate["ADC"][channel].sort(lambda e : e[1], reverse = False)
617 outfile.write("# Stop " + str(datetime.datetime.now()) + "\n# EOF\n")
619 if (len(calibrate["ADC"][channel]) <= 0):
620 print("Error: No calibration points taken for ADC " + str(channel))
626 calibrate["DAC"] = []
628 outfile = log_open("calibrateDAC.dat", "w")
629 outfile.write("# Calibrate DAC\n")
630 outfile.write("# Start " + str(datetime.datetime.now()) + "\n")
632 print("Calibrating DAC...")
633 sys.stdout.write("Number of counts to increment per step: ")
634 read = sys.stdin.readline().strip("\r\n")
637 stepSize = max(1, int(read))
638 sys.stdout.write("\n")
640 outfile.write("# Increment by " + str(stepSize) + "\n")
641 print("Input measured DAC voltage for each level; empty input ends calibration.")
642 print("You may optionally input the DAC voltage before it is amplified too.")
645 while (level < calibrate["DAC_Counts"]):
649 sys.stdout.write(str(level) + " ?")
650 read = sys.stdin.readline().strip("\r\n ")
654 read = read.split(" ")
655 if (len(calibrate["DAC"]) > 0 and len(calibrate["DAC"][len(calibrate["DAC"])-1]) != len(read)):
656 print("Either give one value for EVERY point, or two values for EVERY point. Don't mess around.")
659 calibrate["DAC"].append((level, float(read[0]), float(read[1])))
660 outfile.write(str(level) + "\t" + str(float(read[0])) + "\t" + str(float(read[1])) + "\n")
662 calibrate["DAC"].append((level, float(read[0])))
663 outfile.write(str(level) + "\t" + str(float(read[0])) + "\n")
669 outfile.write("# Stop " + str(datetime.datetime.now()) + "\n# EOF\n")
671 if (len(calibrate["DAC"]) <= 0):
672 print("Error: No calibration points taken for DAC")
676 # Run the main function
677 if __name__ == "__main__":